package com.utilities.pipelineScripts;

import java.io.IOException;

import com.utilities.IO.fileWriters.PrepareGFF3;

public class Gff3Builder {

	/**
	 * @param args
	 * @throws IOException 
	 */
	public static void main(String[] args) throws IOException 
	{
		String hitsFile = args[0];
		String resultGff3File = args[1];
		String gbkFile = args[2];
		String database = args[3];
		
		PrepareGFF3 gff3 = new PrepareGFF3().setInputFile(hitsFile).setOutputFile(resultGff3File).
		setInputFile_gbk(gbkFile).setSeqName(database).setAddSeqInfo(false).makeGff3File();
		gff3.cleanGFF3File();
	}
}
